PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26354-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 230aa    MW: 23905.9 Da    PI: 6.2719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26354-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-0914531155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  TRIUR3_26354-P1 14 LRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 53
                     6******************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.77352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-81358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-131363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-131362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-61453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-101557No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MHAAAAAQPP FGQLRRERIA ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS  60
MSRLGGAAAV GPLVAGLSSE ESYITDNDLY IVKSIGFSIR VIRSIATVLK PESTLQSSGN  120
GNGTSSSGDG NGDDDNGGST LRATEQQVAR LMEEDMGTAM QYLQGKGLCL MPISLASVIS  180
SATSSSLHSA TRPAGNAGGP LHEGGSPASP RLVNGMGADG SRTIRDGSGQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3742251e-143AK374225.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452977.11e-72hypothetical protein SORBIDRAFT_04g035890
SwissprotQ9LSQ31e-58BH082_ARATH; Transcription factor bHLH82
TrEMBLM8ADV81e-166M8ADV8_TRIUA; Transcription factor bHLH82
STRINGMLOC_49032.12e-90(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-27LJRHL1-like 1